../../tmp/servers/virsirnadb/247433393
Result for your query siRNA sequence
RED =100 % Complementary sequence
.=Identical residue
blue alphabets=mismatch
_=Gap 


Acc numberStrain nameStartAlignmentEnd% Identity
Queryvirsi21871gttccgtgctattgagaaa19
AB369690.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E4304...................4322100
NC_001434.1 Hepatitis E virus, complete genome
4254.................._427194
NC_001434.1 Hepatitis E virus, complete genome
45______..........c._5657
D11092.1HPECG Hepatitis E virus genomic RNA, complete genome
4278.................._429594
D11092.1HPECG Hepatitis E virus genomic RNA, complete genome
69______..........c._8057
M80581.1HPEA Hepatitis E Virus, complete cds
4248.................._426594
M80581.1HPEA Hepatitis E Virus, complete cds
39______..........c._5057
L25595.1HPEORFS Hepatitis E virus ORFs 1-3
4277.................._429494
L25595.1HPEORFS Hepatitis E virus ORFs 1-3
68______..........c._7957
M94177.1HPCEGENOM Hepataitis E virus complete genome
4278.................._429594
M94177.1HPCEGENOM Hepataitis E virus complete genome
69______..........c._8057
L25547.1HPEGENA Hepatitis E virus unknown genes
4277.................._429494
L25547.1HPEGENA Hepatitis E virus unknown genes
68______..........c._7957
D11093.1HPEUIGH Hepatitis E virus complete genome sequence
4278.................._429594
D11093.1HPEUIGH Hepatitis E virus complete genome sequence
69______..........c._8057
AF185822.1 Hepatitis E virus nonstructural polyprotein gene, partial cds; struct4227.................._424494
AF185822.1 Hepatitis E virus nonstructural polyprotein gene, partial cds; struct18______..........c._2957
AF444002.1 Hepatitis E virus clone pSK-HEV-2, complete genome
4276.................._429394
AF444002.1 Hepatitis E virus clone pSK-HEV-2, complete genome
67______..........c._7857
AF444003.1 Hepatitis E virus clone pSK-HEV-3, complete genome
4276.................._429394
AF444003.1 Hepatitis E virus clone pSK-HEV-3, complete genome
67______..........c._7857
AB080575.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JI4
4249.................._426694
AY230202.1 Hepatitis E virus from Morocco, complete genome
4276.................._429394
AY230202.1 Hepatitis E virus from Morocco, complete genome
67______..........c._7857
AB097811.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJ13-4318.................._433594
AB097811.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJ13-67______..........c._7857
AY204877.1 Hepatitis E virus strain T3 from Chad polyprotein gene, partial cds; 4237.................._425494
AY204877.1 Hepatitis E virus strain T3 from Chad polyprotein gene, partial cds; 28______..........c._3957
AB197674.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYI-ChiSai014315.................._433294
AB197674.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYI-ChiSai0167______..........c._7857
FJ457024.1 Hepatitis E virus isolate HEV-H from India, complete genome
4278.................._429594
FJ457024.1 Hepatitis E virus isolate HEV-H from India, complete genome
69______..........c._8057
AB481227.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-H4318.................._433594
FJ653660.1 Hepatitis E virus isolate CU001, complete genome
4293.................._431094
GU188851.1 Swine hepatitis E virus isolate WH09, complete genome
4318.................._433594
GU188851.1 Swine hepatitis E virus isolate WH09, complete genome
6581__.........a...____659363
GU188851.1 Swine hepatitis E virus isolate WH09, complete genome
67______..........c._7857
HM439284.1 Hepatitis E virus isolate EChZ20, complete genome
4309.................._432694
AJ272108.1 Hepatitis E virus (genotype 4) complete genome sequence
4318......c............433694
AJ272108.1 Hepatitis E virus (genotype 4) complete genome sequence
3240__...c.........____325263
AJ272108.1 Hepatitis E virus (genotype 4) complete genome sequence
67______..........c._7857
AY115488.1 Swine hepatitis E virus strain Arkell, complete genome
4322.........c.........434094
AF455784.1 Hepatitis E virus strain Osh 205, complete genome
4291...............a...430994
AF455784.1 Hepatitis E virus strain Osh 205, complete genome
6550__.........a...____656263
AY594199.1 Swine hepatitis E virus strain swCH25, complete genome
4326......c............434494
AY594199.1 Swine hepatitis E virus strain swCH25, complete genome
3248__...c.........____326063
AY594199.1 Swine hepatitis E virus strain swCH25, complete genome
75______..........c._8657
AB248521.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ8-5
4309.........c.........432794
AB248521.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ8-5
6568__.........a...____658063
AB248522.1 Hepatitis E virus genomic RNA, complete genome, isolate: swJ12-4
4309.........c.........432794
EF570133.1 Hepatitis E virus isolate SH-SW-zs1, complete genome
4303......c............432194
EF570133.1 Hepatitis E virus isolate SH-SW-zs1, complete genome
6583__.........a...____659563
AB291962.1 Hepatitis E virus genomic RNA, complete genome, isolate: JHK-Toy04C
4306.........c.........432494
AB481226.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-E4309.........c.........432794
AB481226.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-E6568__.........a...____658063
FJ763142.1 Hepatitis E virus isolate KNIH-hHEV4, complete genome
4315......c............433394
GU206559.1 Hepatitis E virus isolate bjsw1, complete genome
4318......c............433694
GU206559.1 Hepatitis E virus isolate bjsw1, complete genome
6581__.........a...____659363
GU206559.1 Hepatitis E virus isolate bjsw1, complete genome
67______..........c._7857
GU361892.1 Swine hepatitis E virus strain hb-3, complete genome
4318......c............433694
HQ709170.1 Hepatitis E virus strain Kernow-C1, complete genome
4493.........c.........451194
AB602441.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJOY_06
4324......g............434294
AB602441.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJOY_06
67______..........c._7857
HQ389543.1 Hepatitis E virus strain Kernow-C1, complete genome
4322.........c.........434094
HQ389544.1 Hepatitis E virus strain Kernow-C1, complete genome
4493.........c.........451194
M73218.1HPESVP Hepatitis E structural and nonstructural protein mRNA, complete4278......c..........._429589
M73218.1HPESVP Hepatitis E structural and nonstructural protein mRNA, complete69______..........c._8057
X98292.1 Hepatitis E virus, complete genome
4277......c..........._429489
X98292.1 Hepatitis E virus, complete genome
68______..........c._7957
X99441.1 Hepatitis E virus ORF1, ORF2 & ORF3
4278......c..........._429589
AF051830.1 Hepatitis E virus strain TK15/92, complete genome
4278......c..........._429589
AF051830.1 Hepatitis E virus strain TK15/92, complete genome
69______..........c._8057
AB074915.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JAK-S4302.........c........_431989
AB074915.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JAK-S3222.a...c.........____323668
AB074915.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JAK-S51______..........c._6257
AB091395.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S4302......c..........._431989
AB091395.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JSN-S51______..........c._6257
AB097812.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA1
4318......c..........._433589
AB097812.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA1
67______..........c._7857
AB108537.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC2204299...t.............._431689
AB108537.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC2206562__.........a...____657463
AB108537.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:CCC22051______..........c._6257
AB099347.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4
4318......c..........._433589
AB099347.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JK4
67______..........c._7857
AB200239.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH024319......c..........._433689
AB200239.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSN-Sap-FH0268______..........c._7957
AB193176.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C
4319......c..........._433689
AB193176.1 Hepatitis E virus genomic RNA, complete genome, isolate: JSF-Tot03C
68______..........c._7957
AB193177.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C
4319......c..........._433689
AB193177.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Sap01C
68______..........c._7957
AB193178.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L
4293......c..........._431089
AB193178.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYN-Nii02L
42______..........c._5357
AB220971.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 4318......c..........._433589
AB220971.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
AB220974.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 4318...............a.._433589
AB220974.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
DQ459342.1 Hepatitis E virus from India, complete genome
4278......c..........._429589
DQ459342.1 Hepatitis E virus from India, complete genome
69______..........c._8057
AB290312.1 Hepatitis E virus genomic RNA, complete genome, clone: swMN06-A1288
4306.........c........_432389
AB290313.1 Hepatitis E virus genomic RNA, complete genome, clone: swMN06-C1056
4306......c..........._432389
EU366959.1 Hepatitis E virus isolate swGX32, complete genome
4319......c..........._433689
EU366959.1 Hepatitis E virus isolate swGX32, complete genome
6580.c.........a...____659468
EU366959.1 Hepatitis E virus isolate swGX32, complete genome
71______..........c._8257
EU360977.1 Hepatitis E virus isolate swX07-E1, complete genome
4313.........c........_433089
EU360977.1 Hepatitis E virus isolate swX07-E1, complete genome
3233.a...c.........____324768
AB369687.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E4289.........c........_430689
EU723515.1 Swine hepatitis E virus isolate SWP7, complete genome
4371.........c........_438889
EU723516.1 Swine hepatitis E virus isolate SWP8, complete genome
4371.........c........_438889
AB291958.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JNH-E4308.........c........_432589
AB291958.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JNH-E6567__.........a...____657963
AB291961.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMH-Osa04C
4310.........c........_432789
EU723514.2 Swine hepatitis E virus isolate SWP6, complete genome
4396.........c........_441389
FJ610232.1 Swine hepatitis E virus isolate swCH189, complete genome
4319......c..........._433689
FJ610232.1 Swine hepatitis E virus isolate swCH189, complete genome
68______..........c._7957
FJ956757.1 Hepatitis E virus isolate HEV_RKI, complete genome
4321.........c........_433889
FJ956757.1 Hepatitis E virus isolate HEV_RKI, complete genome
3241.a...c.........____325568
GU119961.3 Swine hepatitis E virus isolate CHN-XJ-SW13, complete genome
4319......c..........._433689
GU119961.3 Swine hepatitis E virus isolate CHN-XJ-SW13, complete genome
6582__.........a...____659463
GU119961.3 Swine hepatitis E virus isolate CHN-XJ-SW13, complete genome
68______..........c._7957
AF082843.1 Swine hepatitis E virus nonstructural polyprotein and putative capsid4305.........c.....a...432389
AY575857.1 Hepatitis E virus clone pSHEV-1, complete genome
4322.........c.....a...434089
AY575858.1 Hepatitis E virus clone pSHEV-2, complete genome
4322.........c.....a...434089
AY575859.1 Hepatitis E virus clone pSHEV-3, complete genome
4322.........c.....a...434089
AB189070.1 Hepatitis E virus genomic RNA, complete genome, isolate: JBOAR1-Hyo044307.........c.....a...432589
AB189071.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JDEER4290.........c.....a...430889
AB189072.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy4281.........c.....a...429989
AB189073.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy4281.........c.....a...429989
AB189074.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy4281.........c.....a...429989
AB189075.1 Hepatitis E virus genes for nonstructural protein, capsid protein, hy4281.........c.....a...429989
AB222183.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJTS1
4306.........c..c......432489
AB246676.1 Hepatitis E virus genomic RNA, complete genome, isolate:HEVN1
4306...t...........a...432489
DQ450072.1 Hepatitis E virus isolate swCH31, complete genome
4319...t..c............433789
AB369691.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E4286...t.....c.........430489
FJ527832.2 Hepatitis E virus isolate SAAS-JDY5, complete genome
4304.........c..c......432289
FJ705359.1 Hepatitis E virus isolate wbGER27, complete genome
4306...t...........a...432489
FJ998008.1 Swine hepatitis E virus isolate BB02, complete genome
4281............c..a...429989
GU937805.1 Hepatitis E virus isolate ch-bj-n1, complete genome
4363......g..c.........438189
D10330.1HPEHEV Hepatitis E virus genomic RNA
4278...t..c..........._429584
D10330.1HPEHEV Hepatitis E virus genomic RNA
69______..........c._8057
EU375463.1 Hepatitis E virus isolate Thai-swHEV07, complete genome
4310.........c..a....._432784
AB369689.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E4286.........c.....a.._430384
AB369689.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, strain: E6543.c.........a...____655768
AB301710.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 4306.........c..c..a...432484
AB369688.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E4295...t..c..c.........431384
AB369688.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, strain: E47______..........c._5857
AB362843.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p4306.........c..c..a...432484
AB362842.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p4306.........c..c..a...432484
AB362841.1 Hepatitis E virus genomic RNA, complete genome, isolate: JE03-1760F_p4306.........c..c..a...432484
AB362840.1 Hepatitis E virus genomic RNA, complete genome, isolate: 114d/A549
4306.........c..c..a...432484
AB362839.1 Hepatitis E virus genomic RNA, complete genome, isolate: 118d/Alex
4306.........c..c..a...432484
AB425830.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 4306.........c..c..a...432484
AB437316.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 4306.........c..c..a...432484
AB437319.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 3948.........c..c..a...396684
AB437317.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 4306.........c..c..a...432484
AB437318.1 Hepatitis E virus genomic RNA, complete genome, genotype 3, isolate: 4306.........c..c..a...432484
AB222182.1 Hepatitis E virus genomic RNA, complete genome, isolate: wbJSG1
4306.........c..c..a.._432378
EU723513.1 Swine hepatitis E virus isolate SW627, complete genome
3204.a...c.........____321868
FJ426404.1 Swine hepatitis E virus isolate swKOR-2, complete genome
3221.a...c.........____323568
EU723512.2 Swine hepatitis E virus isolate SW626, complete genome
3229.a...c.........____324368
AB481228.1 Swine hepatitis E virus genomic RNA, complete genome, isolate: swJB-M3244.a...c.........____325868
AB253420.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:HEVN2
6556__.........a...____656863
AB253420.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate:HEVN2
42______..........c._5357
AB248520.1 Hepatitis E virus genomic RNA, complete genome, isolate: HE-JA04-19116607__.........a...____661963
FJ426403.1 Swine hepatitis E virus isolate swKOR-1, complete genome
3223__...c.........____323563
AB291964.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYK-Tok03C
6576__.........a...____658863
AB291964.1 Hepatitis E virus genomic RNA, complete genome, isolate: JYK-Tok03C
68______..........c._7957
AF060669.1 Hepatitis E virus strain HEV-US2 polyprotein (ORF1), (ORF3), and caps77______..........c._8857
AF459438.1 Hepatitis E virus from North India, complete genome
69______..........c._8057
AB074917.3 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JKK-S51______..........c._6257
AY723745.1 Hepatitis E virus isolate IND-SW-00-01, complete genome
67______..........c._7857
AB197673.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-ChiSai9868______..........c._7957
AB220972.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
AB220973.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
AB220975.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
AB220976.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
AB220977.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
AB220978.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
AB220979.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
EF077630.1 Hepatitis E virus isolate Ch-S-1, complete genome
67______..........c._7857
DQ279091.2 Swine hepatitis E virus isolate swDQ, complete genome
68______..........c._7957
EU676172.2 Swine hepatitis E virus isolate swGX40, complete genome
67______..........c._7857
AB291959.1 Hepatitis E virus genomic RNA, nearly complete genome, isolate: JTC-K27______..........c._3857
AB291965.1 Hepatitis E virus genomic RNA, complete genome, isolate: HRC-HE14C
67______..........c._7857
AB291966.1 Hepatitis E virus genomic RNA, complete genome, isolate: JST-KitAsa0467______..........c._7857
AB291967.1 Hepatitis E virus genomic RNA, complete genome, isolate: JKO-Aba-FH0667______..........c._7857
AB291968.1 Hepatitis E virus genomic RNA, complete genome, isolate: JMM-Aba06C
67______..........c._7857
AB480825.1 Hepatitis E virus genomic RNA, complete genome, genotype 4, isolate: 67______..........c._7857
GU119960.2 Swine hepatitis E virus isolate CHN-XJ-SW33, complete genome
67______..........c._7857
HQ634346.1 Hepatitis E virus strain TW6196E, complete genome
68______..........c._7957
AY535004.1 Avian hepatitis E virus, complete genome
1553__.........._______154452
    
                             

                         

                       

                    

                

                

                    

                    

                    

                    

                    

                        

                            
Bioinformatics centre
Institute of Microbial Technology, Chandigarh, India